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Avanti Shrikumar

Postdoctoral Researcher at Stanford University

Avanti Shrikumar is a computational biologist and machine learning researcher who completed her PhD in Computer Science at Stanford University.12 She was advised by Professor Anshul Kundaje during her doctoral studies, focusing on developing methods to make deep learning models interpretable and applying these techniques to study regulatory genomics.2

After completing her PhD in 2020, Shrikumar became a Ram and Vijay Shriram postdoctoral fellow in the Department of Earth System Science at Stanford University.2 In this role, she worked with Professor Karen Casciotti on computational methods for oceanographic data analysis, including the development of pyOMPA, an improved method for water mass mixing analysis.2

Some of Shrikumar's notable research contributions include:

  1. TF-MoDISco: A method for revealing recurring patterns in genomic data using input-level importance scores.2
  2. DeepLIFT: A computationally efficient method for generating input-level importance scores to explain individual predictions made by deep learning models.24
  3. GkmExplain: A method for interpreting nonlinear gapped-kmer support vector machines.2

Shrikumar's work has been widely cited, with her paper on learning important features through propagating activation differences receiving over 4,800 citations.1 She has also contributed to various other publications in the fields of machine learning, computational biology, and genomics.3

Prior to her PhD, Shrikumar earned a Bachelor's degree in Computer Science with Molecular Biology from MIT and worked as a developer for the Healthcare team at Palantir Technologies.2

Highlights

Sep 25 · dblp.org
Avanti Shrikumar - DBLP
‪Avanti Shrikumar‬ - ‪Google Scholar‬
Mar 12 · youtube.com
Avanti Shrikumar (Stanford University) - Kipoi Seminar - YouTube
Avanti Shrikumar (Stanford University) - Kipoi Seminar - YouTube
Feb 21 · SciTechDaily
Explainable Artificial Intelligence for Decoding Regulatory Instructions in DNA - SciTechDaily
Feb 18 · EurekAlert
Explainable AI for decoding genome biology - EurekAlert
Jan 1 · openreview.net
Avanti Shrikumar - OpenReview
Jul 7 · stanford.edu
Avanti Shrikumar
Avanti Shrikumar

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Avanti Shrikumar
Avanti Shrikumar, photo 1
Avanti Shrikumar, photo 2
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Location

Palo Alto, California